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1.20 a resolution crystal structure of dioxygen bound copper- containing nitrite reductase from geobacillus thermodenitrificans

Analyse 1.20 a resolution crystal structure of dioxygen bound copper- containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3WNJ
Type: protein
Length: 298 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nitrite reductase
UniProt: A4IL26
Ligands: CU, NA, SO4, OXY

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nitrite reductase	protein	298	10% helix, 47% strand	A4IL26

Ligands and binding sites

CU · Copper (II) ion · metal · 6 copies · chains A
NA · Sodium ion · metal · chains A
SO4 · Sulfate ion · ion · 3 copies · chains A
OXY · Oxygen molecule · ion · chains A
ACY · Acetic acid · additive · 4 copies · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 covalent (additive adduct).

Compared structures

3WNJ · 1.20 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt A4IL26
Elsewhere: RCSB PDB 3WNJ · PDBe 3WNJ · UniProt A4IL26

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