Research workbench
Crystal structure of outer membrane protein porb from neisseria meningitidis in complex with galactose
Analyse Crystal structure of outer membrane protein porb from neisseria meningitidis in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VZW
- Type
- protein
- Length
- 341 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane proteins
- Ligands
- GAL, CS
- Pockets
- 4 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Outer membrane proteins | protein | 341 | 3% helix, 59% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 130 | 0.69 | 0.90 | 23 | empty |
| 2 | 789 | 0.69 | 0.76 | 82 | GAL, CS |
| 3 | 195 | 0.46 | 0.74 | 34 | empty |
| 4 | 124 | 0.39 | 0.74 | 18 | empty |
Compared structures
- 3VZW · Crystal Structure of outer membrane protein PorB from Neisseria meningitidis in complex… · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3VZW · PDBe 3VZW
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