Research workbench
Structural basis of transcriptional gene silencing mediated by arabidopsis MOM1
Analyse Structural basis of transcriptional gene silencing mediated by arabidopsis MOM1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VEM
- Type
- protein
- Length
- 327 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Helicase protein MOM1
- UniProt
- Q9M658
Structure
x-ray diffraction · 3 distinct chains · 90% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Helicase protein MOM1 | protein | 82 | 89% helix, 0% strand | Q9M658 |
| C | Helicase protein MOM1 | protein | 83 | 89% helix, 0% strand | Q9M658 |
| D | Helicase protein MOM1 | protein | 80 | 91% helix, 0% strand | Q9M658 |
Interfaces
3 interfaces between chains.
- A–B · 1765 Ų buried · 5 hydrogen bonds · protein-protein
- C–D · 1753 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 563 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 3VEM · Structural basis of transcriptional gene silencing mediated by Arabidopsis MOM1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9M658 · AlphaFold monomer V2.0 prediction for helicase protein MOM1 (Q9M658) · a predicted model of the same protein · chain D against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9M658
- Elsewhere: RCSB PDB 3VEM · PDBe 3VEM · UniProt Q9M658
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.