Research workbench
Crystal structure analysis of venezuelan equine encephalitis virus capsid protein nls and importin alpha
Analyse Crystal structure analysis of venezuelan equine encephalitis virus capsid… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3VE6
- Type
- protein
- Length
- 438 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Importin subunit alpha-2; Venezuelan equine encephalitis virus capsid protein nls
- UniProt
- P52293, Q9WCF8
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 69% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Importin subunit alpha-2 | protein | 426 | 71% helix, 0% strand | P52293 |
| B | Venezuelan equine encephalitis virus capsid protein nls | protein | 12 | 0% helix, 0% strand | Q9WCF8 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.57 | 0.86 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 847 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 3VE6 · Crystal Structure Analysis of Venezuelan Equine Encephalitis Virus Capsid Protein NLS and… · the same entry in another collection · chain A against A, TM-score 1.00
- P52293 · AlphaFold monomer V2.0 prediction for importin subunit alpha-1 (P52293) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52293
- Every structure of UniProt Q9WCF8
- Elsewhere: RCSB PDB 3VE6 · PDBe 3VE6 · UniProt P52293 · UniProt Q9WCF8
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