Research workbench
Crystal structure of staphylococcus aureus biotin protein ligase in complex with biotin
Analyse Crystal structure of staphylococcus aureus biotin protein ligase in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3V8K
- Type
- protein
- Length
- 322 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Biotin ligase
- UniProt
- C8N5A9
- Ligands
- BTN
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Biotin ligase | protein | 322 | 35% helix, 29% strand | C8N5A9 |
Ligands and binding sites
- BTN · Biotin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 342 | 0.69 | 0.83 | 47 | BTN |
| 2 | 87 | 0.39 | 0.77 | 15 | empty |
| 3 | 55 | 0.33 | 0.77 | 11 | empty |
Compared structures
- 3V8K · Crystal structure of Staphylococcus aureus biotin protein ligase in complex with biotin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8N5A9
- Elsewhere: RCSB PDB 3V8K · PDBe 3V8K · UniProt C8N5A9
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