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Crystal structure of hpce

Analyse Crystal structure of hpce in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1GTT
Type: protein
Length: 1,684 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 4-hydroxyphenylacetate degradation bifunctional ISOMERASE/DECARBOXYLASE
EC: 5.3.3.10, 4.1.1.-
UniProt: Q46978
Ligands: CA
Pockets: 20 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	4-hydroxyphenylacetate degradation bifunctional ISOMERASE/DECARBOXYLASE (EC 5.3.3.10, 4.1.1.-)	protein	421	17% helix, 35% strand	Q46978

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	911	0.79	0.82	107	empty
2	1057	0.76	0.78	92	empty
3	669	0.76	0.81	77	empty
4	59	0.73	0.98	16	empty
5	50	0.72	0.99	16	empty

Interfaces

3 interfaces between chains.

B–C · 661 Å² buried · 4 hydrogen bonds · protein-protein
A–D · 471 Å² buried · 3 hydrogen bonds · protein-protein
B–D · 313 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1GTT · Crystal structure of hpce · the same entry in another collection · chain A against A, TM-score 1.00
Q46978 · AlphaFold monomer V2.0 prediction for 4-hydroxyphenylacetate degradation bifunctional… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q46978
Elsewhere: RCSB PDB 1GTT · PDBe 1GTT · UniProt Q46978

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