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Crystal structure of CIAP1 BIR3 bound to GDC0152

Analyse Crystal structure of CIAP1 BIR3 bound to GDC0152 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
3UW4
Type
protein
Length
90 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Baculoviral iap repeat-containing protein 2, baculoviral iap repeat-containing protein 4…
UniProt
Q13490, P98170
Ligands
0DQ, ZN

Structure

x-ray diffraction · 2 distinct chains · 41% helix, 11% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABaculoviral iap repeat-containing protein 2, baculoviral iap repeat-containing protein 4protein8743% helix, 10% strandQ13490, P98170
ZGDC0152protein30% helix, 33% strand—

Ligands and binding sites

  • 0DQ · 4-phenyl-1,2,3-thiadiazol-5-amine · ligand · chains A, Z
  • ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–Z · 278 Ų buried · 7 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified, 1 covalent (nonstandard, covalent ligand).

Compared structures

  • 3UW4 · Crystal structure of cIAP1 BIR3 bound to GDC0152 · the same entry in another collection · chain A against A, TM-score 1.00
  • Q13490 · AlphaFold monomer V2.0 prediction for baculoviral iap repeat- containing protein 2… · a predicted model of the same protein · chain A against A, TM-score 0.96

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