Research workbench
The glic pentameric ligand-gated ion channel LOOP2-21' mutant reduced in the crystal in a locally-closed conformation (LC1 subtype)
Analyse The glic pentameric ligand-gated ion channel LOOP2-21' mutant reduced in the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UU4
- Type
- protein
- Length
- 1,555 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLR4197 protein
- UniProt
- Q7NDN8
- Pockets
- 20 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | GLR4197 protein | protein | 311 | 38% helix, 34% strand | Q7NDN8 |
Ligands and binding sites
- LMT · Dodecyl-beta-D-maltoside · additive · chains A, B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 17 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 515 | 0.81 | 0.87 | 54 | LMT |
| 2 | 542 | 0.80 | 0.86 | 52 | empty |
| 3 | 583 | 0.80 | 0.85 | 49 | empty |
| 4 | 538 | 0.79 | 0.85 | 54 | empty |
| 5 | 218 | 0.79 | 0.92 | 27 | empty |
Interfaces
5 interfaces between chains.
- B–C · 2302 Ų buried · 25 hydrogen bonds · protein-protein
- C–D · 2299 Ų buried · 24 hydrogen bonds · protein-protein
- A–B · 2297 Ų buried · 20 hydrogen bonds · protein-protein
- A–E · 2264 Ų buried · 19 hydrogen bonds · protein-protein
- D–E · 2234 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 3UU4 · The GLIC pentameric Ligand-Gated Ion Channel Loop2-21' mutant reduced in the crystal in a… · the same entry in another collection · chain E against E, TM-score 1.00
- Q7NDN8 · AlphaFold monomer V2.0 prediction for proton-gated ion channel (Q7NDN8) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7NDN8
- Elsewhere: RCSB PDB 3UU4 · PDBe 3UU4 · UniProt Q7NDN8
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