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Crystal structure of truncated exo-1,3/1,4-beta-glucanase (exop) from pseudoalteromonas sp. BB1
Analyse Crystal structure of truncated exo-1,3/1,4-beta-glucanase (exop) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3USZ
- Type
- protein
- Length
- 622 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Exo-1,3/1,4-beta-glucanase
- EC
- 3.2.1.-
- UniProt
- Q0QJA3
- Ligands
- CA, NA, K
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Exo-1,3/1,4-beta-glucanase (EC 3.2.1.-) | protein | 622 | 38% helix, 14% strand | Q0QJA3 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- NA · Sodium ion · metal · chains A
- K · Potassium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 309 | 0.67 | 0.82 | 48 | EDO |
| 2 | 193 | 0.50 | 0.76 | 31 | empty |
| 3 | 52 | 0.27 | 0.74 | 16 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 3USZ · Crystal structure of truncated exo-1,3/1,4-beta-glucanase (EXOP) from Pseudoalteromonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0QJA3
- Elsewhere: RCSB PDB 3USZ · PDBe 3USZ · UniProt Q0QJA3
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