Research workbench
1.5A resolution structure of apo norwalk virus protease
Analyse 1.5A resolution structure of apo norwalk virus protease in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UR6
- Type
- protein
- Length
- 337 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3C-like protease
- EC
- 3.4.22.66
- UniProt
- Q83883
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3C-like protease (EC 3.4.22.66) | protein | 164 | 9% helix, 53% strand | Q83883 |
| B | 3C-like protease (EC 3.4.22.66) | protein | 173 | 8% helix, 50% strand | Q83883 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 266 | 0.64 | 0.82 | 29 | empty |
| 2 | 80 | 0.34 | 0.75 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 472 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3UR6 · 1.5A resolution structure of apo Norwalk Virus Protease · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q83883
- Elsewhere: RCSB PDB 3UR6 · PDBe 3UR6 · UniProt Q83883
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