Research workbench

Loop deletion mutant of salmonella typhi osmoporin (OMPC):AN outer membrane protein.

Analyse Loop deletion mutant of salmonella typhi osmoporin (OMPC):AN outer membrane… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3UPG
Type: protein
Length: 311 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane protein C
UniProt: P0A263
Ligands: CA, CL
Pockets: 3 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane protein C	protein	311	4% helix, 53% strand	P0A263

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
CL · Chloride ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	823	0.69	0.75	65	CL
2	170	0.41	0.73	27	empty
3	53	0.32	0.77	14	empty

Compared structures

3UPG · Loop deletion mutant of Salmonella typhi osmoporin (OmpC):an Outer Membrane Protein. · the same entry in another collection · chain A against A, TM-score 1.00
P0A263 · AlphaFold monomer V2.0 prediction for outer membrane porin C (P0A263) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A263
Elsewhere: RCSB PDB 3UPG · PDBe 3UPG · UniProt P0A263

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