Research workbench
Crystal structure of the inositol 1,4,5-trisphosphate receptor with ligand bound form.
Analyse Crystal structure of the inositol 1,4,5-trisphosphate receptor with ligand… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3UJ0
- Type
- protein
- Length
- 1,004 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Inositol 1,4,5-trisphosphate receptor type 1
- UniProt
- P29994
- Ligands
- I3P
- Pockets
- 17 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Inositol 1,4,5-trisphosphate receptor type 1 | protein | 502 | 24% helix, 29% strand | P29994 |
Ligands and binding sites
- I3P · D-myo-inositol-1,4,5-triphosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
17 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.82 | 0.94 | 39 | empty |
| 2 | 810 | 0.80 | 0.83 | 95 | empty |
| 3 | 783 | 0.76 | 0.80 | 85 | empty |
| 4 | 358 | 0.66 | 0.81 | 56 | empty |
| 5 | 235 | 0.54 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 956 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 3UJ0 · Crystal structure of the inositol 1,4,5-trisphosphate receptor with ligand bound form. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29994
- Elsewhere: RCSB PDB 3UJ0 · PDBe 3UJ0 · UniProt P29994
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.