Research workbench
Crystal structure of a putative metal binding protein RUMGNA_00854 (ZP_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a resolution
Analyse Crystal structure of a putative metal binding protein RUMGNA_00854… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3U7Z
- Type
- protein
- Length
- 193 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative metal binding protein RUMGNA_00854
- UniProt
- A7AZY1
- Ligands
- CA
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 13% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative metal binding protein RUMGNA_00854 | protein | 97 | 13% helix, 47% strand | A7AZY1 |
| B | Putative metal binding protein RUMGNA_00854 | protein | 96 | 14% helix, 48% strand | A7AZY1 |
Ligands and binding sites
- CA · Calcium ion · metal · 12 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 198 | 0.61 | 0.82 | 26 | empty |
| 2 | 102 | 0.41 | 0.77 | 16 | EDO |
| 3 | 76 | 0.39 | 0.77 | 13 | EDO |
Interfaces
1 interface between chains.
- A–B · 434 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 3U7Z · Crystal structure of a putative metal binding protein RUMGNA_00854 (ZP_02040092.1) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7AZY1
- Elsewhere: RCSB PDB 3U7Z · PDBe 3U7Z · UniProt A7AZY1
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