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The structure of a protein in glycosyl transferase family 8 from anaerococcus prevotii.
Analyse The structure of a protein in glycosyl transferase family 8 from anaerococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3TZT
- Type
- protein
- Length
- 465 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycosyl transferase family 8
- UniProt
- C7RG54
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycosyl transferase family 8 | protein | 234 | 44% helix, 22% strand | C7RG54 |
| B | Glycosyl transferase family 8 | protein | 231 | 44% helix, 21% strand | C7RG54 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.42 | 0.75 | 27 | empty |
| 2 | 89 | 0.33 | 0.74 | 22 | EDO |
Interfaces
1 interface between chains.
- A–B · 1107 Ų buried · 24 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 15 modified (engineered).
Compared structures
- 3TZT · The structure of a protein in glycosyl transferase family 8 from Anaerococcus prevotii. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7RG54
- Elsewhere: RCSB PDB 3TZT · PDBe 3TZT · UniProt C7RG54
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