Research workbench
The structure of a putative ABC-transporter periplasmic component from rhodopseudomonas palustris
Analyse The structure of a putative ABC-transporter periplasmic component from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3TX6
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative branched-chain amino acid transport system substrate-binding protein
- UniProt
- Q6N8W4
- Ligands
- ENO, SO4, CL
- Pockets
- 1 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative branched-chain amino acid transport system substrate-binding protein | protein | 360 | 48% helix, 20% strand | Q6N8W4 |
Ligands and binding sites
- ENO · 3-(4-hydroxy-phenyl)pyruvic acid · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · chains A
- ACY · Acetic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.40 | 0.79 | 22 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 3TX6 · The Structure of a putative ABC-transporter periplasmic component from Rhodopseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6N8W4
- Elsewhere: RCSB PDB 3TX6 · PDBe 3TX6 · UniProt Q6N8W4
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