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Crystal structure of the basic protease bprb from the ovine footrot pathogen, dichelobacter nodosus

Analyse Crystal structure of the basic protease bprb from the ovine footrot pathogen… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3TI9
Type: protein
Length: 341 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Serine protease
UniProt: Q46547
Ligands: CA, CL
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Serine protease	protein	341	29% helix, 18% strand	Q46547

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A
CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	191	0.45	0.74	37	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

3TI9 · Crystal structure of the basic protease BprB from the ovine footrot pathogen… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q46547
Elsewhere: RCSB PDB 3TI9 · PDBe 3TI9 · UniProt Q46547

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