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Crystal structure of the basic protease bprv from the ovine footrot pathogen, dichelobacter nodosus

Analyse Crystal structure of the basic protease bprv from the ovine footrot pathogen… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3TI7
Type: protein
Length: 340 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Basic extracellular subtilisin-like protease bprv
EC: 3.4.21.-
UniProt: A5EVD0
Ligands: CA
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Basic extracellular subtilisin-like protease bprv (EC 3.4.21.-)	protein	340	29% helix, 18% strand	A5EVD0

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	219	0.47	0.74	32	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

3TI7 · Crystal structure of the basic protease BprV from the ovine footrot pathogen… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5EVD0
Elsewhere: RCSB PDB 3TI7 · PDBe 3TI7 · UniProt A5EVD0

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