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Crystal structure of the isc domain of vibb
Analyse Crystal structure of the isc domain of vibb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3TB4
- Type
- protein
- Length
- 205 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vibriobactin-specific isochorismatase
- EC
- 3.3.2.1
- UniProt
- P0C6D3
- Ligands
- CA
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vibriobactin-specific isochorismatase (EC 3.3.2.1) | protein | 205 | 39% helix, 19% strand | P0C6D3 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
- BOG · octyl beta-D-glucopyranoside · additive · chains A
- PGE · Triethylene glycol · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 148 | 0.66 | 0.87 | 24 | BOG, CA |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C6D3
- Elsewhere: RCSB PDB 3TB4 · PDBe 3TB4 · UniProt P0C6D3
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