Research workbench
Crystal structure of pyridoxine 4-oxidase from mesorbium loti
Analyse Crystal structure of pyridoxine 4-oxidase from mesorbium loti in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3T37
- Type
- protein
- Length
- 509 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable dehydrogenase
- EC
- 1.1.3.12
- UniProt
- Q988D6
- Ligands
- FAD
- Pockets
- 2 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable dehydrogenase (EC 1.1.3.12) | protein | 509 | 28% helix, 25% strand | Q988D6 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 632 | 0.83 | 0.88 | 79 | FAD |
| 2 | 63 | 0.32 | 0.76 | 19 | empty |
Compared structures
- 3T37 · Crystal structure of pyridoxine 4-oxidase from Mesorbium loti · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q988D6
- Elsewhere: RCSB PDB 3T37 · PDBe 3T37 · UniProt Q988D6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.