Research workbench
Crystal structure of thf riboswitch, bound with thf
Analyse Crystal structure of thf riboswitch, bound with thf in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SUX
- Type
- RNA
- Length
- 101 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Riboswitch
- Ligands
- THF, NA
- Pockets
- 5 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Riboswitch | rna | 101 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 363 | 0.54 | 0.75 | 24 | empty |
| 2 | 359 | 0.50 | 0.73 | 22 | empty |
| 3 | 272 | 0.48 | 0.74 | 20 | NA |
| 4 | 179 | 0.45 | 0.76 | 14 | empty |
| 5 | 101 | 0.37 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 3SUX · Crystal structure of THF riboswitch, bound with THF · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3SUX · PDBe 3SUX
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