Research workbench

2.1A crystal structure of the phosphate bound ATP binding domain of archaeoglobus fulgidus copb

Analyse 2.1A crystal structure of the phosphate bound ATP binding domain of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3SKY
Type: protein
Length: 261 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Copper-exporting P-type ATPase B
EC: 3.6.3.4
UniProt: O30085
Ligands: PO4
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Copper-exporting P-type ATPase B (EC 3.6.3.4)	protein	261	38% helix, 28% strand	O30085

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A
MPO · 3[N-morpholino]propane sulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.35	0.75	20	empty

Compared structures

3SKY · 2.1A crystal structure of the phosphate bound ATP binding domain of Archaeoglobus… · the same entry in another collection · chain A against A, TM-score 1.00
O30085 · AlphaFold monomer V2.0 prediction for copper-exporting P-type ATPase B (O30085) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O30085
Elsewhere: RCSB PDB 3SKY · PDBe 3SKY · UniProt O30085

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.