Research workbench
Vbht fic protein from bartonella schoenbuchensis in complex with vbha antitoxin
Analyse Vbht fic protein from bartonella schoenbuchensis in complex with vbha antitoxin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SHG
- Type
- protein
- Length
- 259 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vbht; Vbha
- UniProt
- E6Z0R3, E6Z0R4
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 59% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vbht | protein | 198 | 56% helix, 6% strand | E6Z0R3 |
| B | Vbha | protein | 61 | 72% helix, 0% strand | E6Z0R4 |
Ligands and binding sites
- TLA · L(+)-tartaric acid · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.51 | 0.79 | 27 | TLA |
Interfaces
1 interface between chains.
- A–B · 1601 Ų buried · 23 hydrogen bonds · protein-protein
Compared structures
- 3SHG · VBHT Fic protein from BARTONELLA SCHOENBUCHENSIS in complex with VBHA antitoxin · the same entry in another collection · chain A against A, TM-score 1.00
- E6Z0R3 · AlphaFold monomer V2.0 prediction for protein adenylyltransferase vbht (E6Z0R3) · a predicted model of the same protein · chain A against A, TM-score 0.98
- E6Z0R4 · AlphaFold monomer V2.0 prediction for antitoxin vbha (E6Z0R4) · a predicted model of the same protein · chain B against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E6Z0R3
- Every structure of UniProt E6Z0R4
- Elsewhere: RCSB PDB 3SHG · PDBe 3SHG · UniProt E6Z0R3 · UniProt E6Z0R4
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