Research workbench
Crystal structure of a PRP8 C-terminal fragment
Analyse Crystal structure of a PRP8 C-terminal fragment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3SBG
- Type
- protein
- Length
- 497 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pre-mRNA-splicing factor 8
- UniProt
- P33334
- Pockets
- 6 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pre-mRNA-splicing factor 8 | protein | 497 | 33% helix, 25% strand | P33334 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.68 | 0.96 | 26 | empty |
| 2 | 446 | 0.61 | 0.75 | 47 | empty |
| 3 | 76 | 0.50 | 0.83 | 12 | empty |
| 4 | 89 | 0.41 | 0.79 | 19 | empty |
| 5 | 64 | 0.36 | 0.78 | 17 | empty |
Compared structures
- 3SBG · Crystal structure of a Prp8 C-terminal fragment · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33334
- Elsewhere: RCSB PDB 3SBG · PDBe 3SBG · UniProt P33334
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