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Crystal structure of a putative glycosyl hydrolase (BDI_2473) from parabacteroides distasonis atcc 8503 at 1.85 a resolution
Analyse Crystal structure of a putative glycosyl hydrolase (BDI_2473) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3S5Q
- Type
- protein
- Length
- 213 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative glycosylhydrolase
- UniProt
- A6LES9
- Ligands
- IOD
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative glycosylhydrolase | protein | 213 | 10% helix, 38% strand | A6LES9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.47 | 0.80 | 19 | empty |
| 2 | 53 | 0.25 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 3S5Q · Crystal structure of a putative glycosyl hydrolase (BDI_2473) from Parabacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6LES9
- Elsewhere: RCSB PDB 3S5Q · PDBe 3S5Q · UniProt A6LES9
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