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Native structure of dioclea virgata lectin

Analyse Native structure of dioclea virgata lectin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3RRD
Type: protein
Length: 232 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lectin alpha chain
UniProt: P58907
Ligands: MN, CA

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lectin alpha chain	protein	232	4% helix, 46% strand	P58907

Ligands and binding sites

MN · Manganese (II) ion · metal · chains A
CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

3RRD · Native structure of Dioclea virgata lectin · the same entry in another collection · chain A against A, TM-score 1.00
P58907 · AlphaFold monomer V2.0 prediction for lectin alpha chain (P58907) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P58907
Elsewhere: RCSB PDB 3RRD · PDBe 3RRD · UniProt P58907

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