Research workbench

Crystal structure of the yeast RACK1 dimer in space group P63

Analyse Crystal structure of the yeast RACK1 dimer in space group P63 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3RFG
Type: protein
Length: 576 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Guanine nucleotide-binding protein subunit beta-like protein
UniProt: P38011
Pockets: 4 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 49% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Guanine nucleotide-binding protein subunit beta-like protein	protein	288	0% helix, 49% strand	P38011

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1049	0.79	0.81	71	empty
2	1097	0.79	0.80	76	empty
3	160	0.50	0.78	32	empty
4	123	0.49	0.79	27	empty

Interfaces

1 interface between chains.

A–B · 1095 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

3RFG · Crystal structure of the yeast RACK1 dimer in space group P63 · the same entry in another collection · chain A against A, TM-score 1.00
P38011 · AlphaFold monomer V2.0 prediction for guanine nucleotide-binding protein subunit… · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38011
Elsewhere: RCSB PDB 3RFG · PDBe 3RFG · UniProt P38011

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.