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Human cyclophilin D complexed with a fragment

Analyse Human cyclophilin D complexed with a fragment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3RD9
Type: protein
Length: 164 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidyl-prolyl cis-trans isomerase F, mitochondrial
EC: 5.2.1.8
UniProt: P30405
Ligands: MSY

Structure

x-ray diffraction · 1 distinct chain · 15% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
X	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (EC 5.2.1.8)	protein	164	15% helix, 32% strand	P30405

Ligands and binding sites

MSY · 3-(3-methyl-5-oxo-4,5-dihydro-1H-pyrazol-1-yl)benzenesulfonamide · ligand · chains X
PEG · Di(hydroxyethyl)ether · additive · chains X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

3RD9 · Human Cyclophilin D Complexed with a Fragment · the same entry in another collection · chain X against X, TM-score 1.00
P30405 · AlphaFold monomer V2.0 prediction for peptidyl-prolyl cis-trans isomerase F… · a predicted model of the same protein · chain X against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P30405
Elsewhere: RCSB PDB 3RD9 · PDBe 3RD9 · UniProt P30405

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