Research workbench
Crystal structure of beta-N-acetylhexosaminidase from arthrobacter aurescens
Analyse Crystal structure of beta-N-acetylhexosaminidase from arthrobacter aurescens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3RCN
- Type
- protein
- Length
- 525 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-N-acetylhexosaminidase
- EC
- 3.2.1.52
- UniProt
- A1RBZ5
- Ligands
- SO4
- Pockets
- 5 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-N-acetylhexosaminidase (EC 3.2.1.52) | protein | 525 | 36% helix, 19% strand | A1RBZ5 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A
- GOL · Glycerol · additive · 7 copies · chains A
- ACY · Acetic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 342 | 0.71 | 0.83 | 26 | GOL |
| 2 | 98 | 0.48 | 0.81 | 19 | empty |
| 3 | 71 | 0.44 | 0.82 | 18 | empty |
| 4 | 90 | 0.38 | 0.76 | 20 | empty |
| 5 | 60 | 0.31 | 0.76 | 16 | empty |
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 3RCN · Crystal Structure of Beta-N-Acetylhexosaminidase from Arthrobacter aurescens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1RBZ5
- Elsewhere: RCSB PDB 3RCN · PDBe 3RCN · UniProt A1RBZ5
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