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Crystal structure of efi target 500140:TATD family hydrolase from pseudomonas putida

Analyse Crystal structure of efi target 500140:TATD family hydrolase from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3RCM
Type: protein
Length: 279 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tatd family hydrolase
UniProt: Q88KH9
Ligands: ZN
Pockets: 2 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tatd family hydrolase	protein	279	44% helix, 15% strand	Q88KH9

Ligands and binding sites

ZN · Zinc ion · metal · chains A
CIT · Citric acid · additive · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	159	0.50	0.78	23	CIT, ACT
2	111	0.44	0.78	24	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3RCM · crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88KH9
Elsewhere: RCSB PDB 3RCM · PDBe 3RCM · UniProt Q88KH9

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