Research workbench
Entropic stabilization of the tryptophan synthase a-subunit from a hyperthermophile, pyrococcus furiosus: X-ray analysis and calorimetry
Analyse Entropic stabilization of the tryptophan synthase a-subunit from a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GEQ
- Type
- protein
- Length
- 486 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tryptophan synthase alpha-subunit
- EC
- 4.2.1.20
- UniProt
- Q8U094
- Pockets
- 5 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 52% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tryptophan synthase alpha-subunit (EC 4.2.1.20) | protein | 241 | 53% helix, 17% strand | Q8U094 |
| B | Tryptophan synthase alpha-subunit (EC 4.2.1.20) | protein | 245 | 51% helix, 16% strand | Q8U094 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 232 | 0.65 | 0.83 | 32 | empty |
| 2 | 335 | 0.65 | 0.80 | 42 | empty |
| 3 | 556 | 0.64 | 0.76 | 44 | empty |
| 4 | 110 | 0.44 | 0.77 | 17 | empty |
| 5 | 169 | 0.41 | 0.73 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 575 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 1GEQ · Entropic stabilization of the tryptophan synthase A-subunit from a hyperthermophile… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8U094 · AlphaFold monomer V2.0 prediction for tryptophan synthase alpha chain (Q8U094) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U094
- Elsewhere: RCSB PDB 1GEQ · PDBe 1GEQ · UniProt Q8U094
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.