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Structure of the universal stress protein from archaeoglobus fulgidus in complex with damp
Analyse Structure of the universal stress protein from archaeoglobus fulgidus in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3QTB
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- O29432
- Ligands
- D5M
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 125 | 48% helix, 22% strand | O29432 |
| B | Uncharacterized protein | protein | 133 | 46% helix, 25% strand | O29432 |
Ligands and binding sites
- D5M · 2'-deoxyadenosine-5'-monophosphate · ligand · chains A
- ACT · Acetate ion · additive · 3 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 250 | 0.67 | 0.84 | 30 | ACT |
| 2 | 135 | 0.55 | 0.82 | 23 | D5M |
Interfaces
1 interface between chains.
- A–B · 850 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 3QTB · Structure of the universal stress protein from Archaeoglobus fulgidus in complex with dAMP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O29432
- Elsewhere: RCSB PDB 3QTB · PDBe 3QTB · UniProt O29432
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