Ligand · D5M
D5M · 2'-deoxyadenosine-5'-monophosphate
D5M, 2'-deoxyadenosine-5'-monophosphate (C10 H14 N5 O6 P, 331.2 g/mol), in the MolNFT structures on GenesisL1: bound in 10 records (8 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…
- Component
- D5M
- Formula
- C10 H14 N5 O6 P
- Class
- ligand
- Structures
- 10
- PDB entries
- 8
Binding sites
D5M in 10 structures; the first of them:
- 5IHE · D-family DNA polymerase - DP1 subunit (3'-5' proof-reading exonuclease) · D5M A701 · binds ASP360, HIS362, ASP404, ASN450, HIS451, GLU502, LYS536, HIS560 and 5 more
- 6LOY · crystal structure of alpha-momorcharin in complex with dAMP · D5M A301 · binds VAL92, TYR93, ILE94, PHE106, GLY132, TYR134, ILE178, ALA182 and 5 more
- 7A1F · Crystal structure of human 5' exonuclease Appollo in complex with 5'dAMP · D5M A403 · binds THR147, TYR182, LYS186, PRO256, THR257, SER258, ARG259, TYR273 and 5 more
- 7LTM · Hum8 capsid · D5M A801 · binds VAL421, PRO422, ASN610, ILE623, HIS631, PRO632, SER633, PRO634 and 3 more
Residues it binds most
PRO 123, HIS 131, GLY 125, SER 130, PHE 127, VAL 126, ILE 67, LYS 67, ASN 66, TYR 11 (residue and the binding sites it lines).
Found with
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