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Crystal structure of the C-terminal domain of the yjik protein from escherichia COLI CFT073

Analyse Crystal structure of the C-terminal domain of the yjik protein from escherichia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3QQZ
Type: protein
Length: 243 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein yjik
UniProt: E1PG53
Ligands: CA
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative uncharacterized protein yjik	protein	243	3% helix, 51% strand	E1PG53

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	144	0.47	0.77	20	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3QQZ · Crystal structure of the C-terminal domain of the yjiK protein from Escherichia coli… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E1PG53
Elsewhere: RCSB PDB 3QQZ · PDBe 3QQZ · UniProt E1PG53

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