Research workbench
Amphiphilic nanotubes in the crystal structure of a biosurfactant protein hydrophobin hfbii
Analyse Amphiphilic nanotubes in the crystal structure of a biosurfactant protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3QQT
- Type
- protein
- Length
- 140 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hydrophobin-2
- UniProt
- P79073
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hydrophobin-2 | protein | 70 | 13% helix, 36% strand | P79073 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 146 | 0.48 | 0.78 | 30 | SDS |
| 2 | 63 | 0.31 | 0.75 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 251 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 3QQT · Amphiphilic nanotubes in the crystal structure of a biosurfactant protein hydrophobin… · the same entry in another collection · chain A against A, TM-score 1.00
- P79073 · AlphaFold monomer V2.0 prediction for hydrophobin-2 (P79073) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P79073
- Elsewhere: RCSB PDB 3QQT · PDBe 3QQT · UniProt P79073
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