Research workbench
The crystal structure of pwwp domain of human hepatoma-derived growth factor 2 in complex with H3K79ME3 peptide
Analyse The crystal structure of pwwp domain of human hepatoma-derived growth factor 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3QJ6
- Type
- protein
- Length
- 95 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hepatoma-derived growth factor-related protein 2; H3K79ME3
- UniProt
- Q7Z4V5
- Ligands
- UNX, SO4
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hepatoma-derived growth factor-related protein 2 | protein | 90 | 23% helix, 23% strand | Q7Z4V5 |
| T | H3K79ME3 | protein | 5 | 0% helix, 20% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–T · 430 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (methylation).
Compared structures
- 3QJ6 · The crystal structure of PWWP domain of human Hepatoma-derived growth factor 2 in complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7Z4V5
- Elsewhere: RCSB PDB 3QJ6 · PDBe 3QJ6 · UniProt Q7Z4V5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.