Research workbench
Qsox from trypanosoma brucei
Analyse Qsox from trypanosoma brucei in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3QCP
- Type
- protein
- Length
- 410 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Qsox from trypanosoma brucei (tbqsox)
- EC
- 1.8.3.2
- UniProt
- Q585M6
- Ligands
- FAD
- Pockets
- 3 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Qsox from trypanosoma brucei (tbqsox) (EC 1.8.3.2) | protein | 410 | 47% helix, 8% strand | Q585M6 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 963 | 0.82 | 0.83 | 83 | FAD |
| 2 | 158 | 0.51 | 0.79 | 30 | empty |
| 3 | 73 | 0.34 | 0.76 | 18 | empty |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 3QCP · QSOX from Trypanosoma brucei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q585M6
- Elsewhere: RCSB PDB 3QCP · PDBe 3QCP · UniProt Q585M6
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