Research workbench
The crystal structure of bamb from the bam complex in spacegroup I222
Analyse The crystal structure of bamb from the bam complex in spacegroup I222 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3Q7M
- Type
- protein
- Length
- 344 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipoprotein yfgl
- UniProt
- P77774
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipoprotein yfgl | protein | 344 | 0% helix, 49% strand | P77774 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 398 | 0.58 | 0.75 | 37 | empty |
| 2 | 139 | 0.54 | 0.82 | 26 | empty |
| 3 | 113 | 0.49 | 0.81 | 26 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3Q7M · The crystal structure of BamB from the BAM complex in spacegroup I222 · the same entry in another collection · chain A against A, TM-score 1.00
- P77774 · AlphaFold monomer V2.0 prediction for outer membrane protein assembly factor bamb (P77774) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77774
- Elsewhere: RCSB PDB 3Q7M · PDBe 3Q7M · UniProt P77774
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