Research workbench
Crystal structure analysis of the ferredoxin-NADP+ reductase from maize leaf
Analyse Crystal structure analysis of the ferredoxin-NADP+ reductase from maize leaf in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1GAW
- Type
- protein
- Length
- 609 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferredoxin-NADP+ reductase
- EC
- 1.18.1.2
- UniProt
- Q9SLP6
- Ligands
- FAD
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 25% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferredoxin-NADP+ reductase (EC 1.18.1.2) | protein | 304 | 25% helix, 30% strand | Q9SLP6 |
| B | Ferredoxin-NADP+ reductase (EC 1.18.1.2) | protein | 305 | 25% helix, 30% strand | Q9SLP6 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 506 | 0.59 | 0.74 | 53 | empty |
| 2 | 277 | 0.57 | 0.77 | 43 | FAD |
| 3 | 259 | 0.57 | 0.78 | 43 | FAD |
Interfaces
1 interface between chains.
- A–B · 363 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1GAW · Crystal structure analysis of the ferredoxin-NADP+ reductase from maize leaf · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SLP6
- Elsewhere: RCSB PDB 1GAW · PDBe 1GAW · UniProt Q9SLP6
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