Research workbench
The PABC1 mlle domain bound to the variant PAM2 motif of LARP4B
Analyse The PABC1 mlle domain bound to the variant PAM2 motif of LARP4B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3PTH
- Type
- protein
- Length
- 90 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyadenylate-binding protein 1; La-related protein 4B
- UniProt
- P11940, Q92615
Structure
x-ray diffraction · 2 distinct chains · 62% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyadenylate-binding protein 1 | protein | 75 | 75% helix, 0% strand | P11940 |
| B | La-related protein 4B | protein | 15 | 0% helix, 0% strand | Q92615 |
Interfaces
1 interface between chains.
- A–B · 560 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3PTH · The PABC1 MLLE domain bound to the variant PAM2 motif of LARP4B · the same entry in another collection · chain A against A, TM-score 1.00
- P11940 · AlphaFold monomer V2.0 prediction for polyadenylate-binding protein 1 (P11940) · a predicted model of the same protein · chain A against A, TM-score 0.94
- Q92615 · AlphaFold monomer V2.0 prediction for la-related protein 4B (Q92615) · a predicted model of the same protein · chain B against A, TM-score 0.19
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11940
- Every structure of UniProt Q92615
- Elsewhere: RCSB PDB 3PTH · PDBe 3PTH · UniProt P11940 · UniProt Q92615
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