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Crystal structure of a putative lipoprotein (BACOVA_00967) from bacteroides ovatus at 2.08 a resolution

Analyse Crystal structure of a putative lipoprotein (BACOVA_00967) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3OQQ
Type: protein
Length: 411 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative lipoprotein
UniProt: A7LT28
Ligands: CA
Pockets: 3 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative lipoprotein	protein	411	12% helix, 41% strand	A7LT28

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A
PGE · Triethylene glycol · additive · 2 copies · chains A
ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	359	0.64	0.79	46	empty
2	81	0.34	0.75	18	PGE
3	68	0.33	0.76	18	empty

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

3OQQ · Crystal structure of a Putative lipoprotein (BACOVA_00967) from Bacteroides ovatus at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7LT28
Elsewhere: RCSB PDB 3OQQ · PDBe 3OQQ · UniProt A7LT28

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