Research workbench
The solution structure of an aflatoxin B1 epoxide adduct at the N7 position of guanine opposite an adenine in the complementary strand of an oligodeoxynucleotide duplex, NMR, minimized average structure
Analyse The solution structure of an aflatoxin B1 epoxide adduct at the N7 position of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1AG5
- Type
- DNA
- Length
- 21 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*CP*AP*TP*CP*GP*AP*TP*CP*C)-3'); DNA…
- Ligands
- AFN
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*CP*AP*TP*CP*GP*AP*TP*CP*C)-3') | dna | 10 | — | — |
| B | DNA (5'-D(*GP*GP*AP*TP*CP*AP*GP*AP*TP*GP*G)-3') | dna | 11 | — | — |
Ligands and binding sites
- AFN · 8,9-dihydro-9-hydroxy-aflatoxin B1 · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 444 Ų buried · 51 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1AG5 · The solution structure of an aflatoxin B1 epoxide adduct at the N7 position of guanine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1AG5 · PDBe 1AG5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.