Research workbench
Crystal structure of LAO/AO transport system from mycobacterium smegmatis bound to GDP
Analyse Crystal structure of LAO/AO transport system from mycobacterium smegmatis bound… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3NXS
- Type
- protein
- Length
- 306 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LAO/AO transport system ATPase
- EC
- 2.7.-.-
- UniProt
- A0QX37
- Ligands
- GDP, CL
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LAO/AO transport system ATPase (EC 2.7.-.-) | protein | 306 | 56% helix, 12% strand | A0QX37 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 175 | 0.57 | 0.80 | 23 | empty |
| 2 | 124 | 0.43 | 0.76 | 24 | empty |
| 3 | 118 | 0.41 | 0.75 | 20 | empty |
Compared structures
- 3NXS · Crystal structure of LAO/AO transport system from Mycobacterium smegmatis bound to GDP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QX37
- Elsewhere: RCSB PDB 3NXS · PDBe 3NXS · UniProt A0QX37
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