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Crystal structure of GEBA250068378 from sulfurospirillum deleyianum

Analyse Crystal structure of GEBA250068378 from sulfurospirillum deleyianum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3NKG
Type: protein
Length: 340 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein GEBA250068378
UniProt: D1B2F0
Pockets: 2 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein GEBA250068378	protein	170	14% helix, 44% strand	D1B2F0

Ligands and binding sites

ACY · Acetic acid · additive · 5 copies · chains A, B
GOL · Glycerol · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	710	0.69	0.76	62	empty
2	67	0.33	0.76	17	empty

Interfaces

1 interface between chains.

A–B · 228 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

3NKG · Crystal Structure of GEBA250068378 from Sulfurospirillum deleyianum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D1B2F0
Elsewhere: RCSB PDB 3NKG · PDBe 3NKG · UniProt D1B2F0

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