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CPN0482 : the arginine binding protein from the periplasm of chlamydia pneumoniae

Analyse CPN0482 : the arginine binding protein from the periplasm of chlamydia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3N26
Type: protein
Length: 231 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Amino acid ABC transporter, periplasmic amino acid-binding protein
UniProt: Q9JS59
Ligands: ARG
Pockets: 3 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Amino acid ABC transporter, periplasmic amino acid-binding protein	protein	231	35% helix, 28% strand	Q9JS59

Ligands and binding sites

ARG · Arginine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.54	0.84	27	empty
2	87	0.36	0.75	17	empty
3	89	0.33	0.73	21	empty

Compared structures

3N26 · Cpn0482 : the arginine binding protein from the periplasm of chlamydia Pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9JS59
Elsewhere: RCSB PDB 3N26 · PDBe 3N26 · UniProt Q9JS59

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