Research workbench
Crystal structure of drosophia ago-paz domain in complex with 3'-end 2'-O-methylated RNA
Analyse Crystal structure of drosophia ago-paz domain in complex with 3'-end… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3MJ0
- Type
- protein + RNA
- Length
- 127 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein argonaute-2; RNA (5'-R(*CP*GP*UP*UP*AP*CP*GP*CP*(OMU))-3')
- UniProt
- Q9VUQ5
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein argonaute-2 | protein | 118 | 26% helix, 30% strand | Q9VUQ5 |
| B | RNA (5'-R(*CP*GP*UP*UP*AP*CP*GP*CP*(OMU))-3') | rna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 395 Ų buried · 10 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 3MJ0 · Crystal Structure of Drosophia Ago-PAZ domain in complex with 3'-end 2'-O-methylated RNA · the same entry in another collection · chain A against A, TM-score 1.00
- Q9VUQ5 · AlphaFold monomer V2.0 prediction for protein argonaute-2 (Q9VUQ5) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VUQ5
- Elsewhere: RCSB PDB 3MJ0 · PDBe 3MJ0 · UniProt Q9VUQ5
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