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Crystal structure of putative protoporphyrinogen oxidase (YP_001813199.1) from exiguobacterium sp. 255-15 at 2.06 a resolution

Analyse Crystal structure of putative protoporphyrinogen oxidase (YP_001813199.1) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3LOV
Type: protein
Length: 451 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protoporphyrinogen oxidase
EC: 1.3.3.4
UniProt: B1YKJ9
Ligands: FAD
Pockets: 1 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protoporphyrinogen oxidase (EC 1.3.3.4)	protein	451	35% helix, 24% strand	B1YKJ9

Ligands and binding sites

FAD · Flavin-adenine dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	990	0.83	0.84	105	FAD

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

3LOV · Crystal structure of Putative protoporphyrinogen oxidase (YP_001813199.1) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B1YKJ9
Elsewhere: RCSB PDB 3LOV · PDBe 3LOV · UniProt B1YKJ9

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