Crystal structure analysis of maclura pomifera agglutinin complex with gal-beta-1,3-galnac

Structure

x-ray diffraction · 2 distinct chains · 0% helix, 63% strand (DSSP).

Ligands and binding sites

• NGA · 2-acetamido-2-deoxy-beta-D-galactopyranose · sugar · chains A
• GAL · beta-D-galactopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

• A–B · 519 Ų buried · 8 hydrogen bonds · protein-protein

Compared structures

• 3LLZ · Crystal Structure Analysis of Maclura pomifera agglutinin complex with Gal-beta-1,3-GalNAc · the same entry in another collection · chain A against A, TM-score 1.00
• P18674 · AlphaFold monomer V2.0 prediction for agglutinin alpha chain (P18674) · a predicted model of the same protein · chain A against A, TM-score 1.00
• P18676 · AlphaFold monomer V2.0 prediction for agglutinin beta-2 chain (P18676) · a predicted model of the same protein · chain B against A, TM-score 0.24

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P18674
• Every structure of UniProt P18676
• Elsewhere: RCSB PDB 3LLZ · PDBe 3LLZ · UniProt P18674 · UniProt P18676