Research workbench
Crystal structure and trimer-monomer transition of N-terminal domain of EHCABP1 from entamoeba histolytica
Analyse Crystal structure and trimer-monomer transition of N-terminal domain of EHCABP1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 3LI6
- Type
- protein
- Length
- 257 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Calcium-binding protein
- UniProt
- P38505
- Ligands
- CA
- Pockets
- 2 · best druggability 0.29
Structure
x-ray diffraction · 2 distinct chains · 64% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, G, J | Calcium-binding protein | protein | 64 | 64% helix, 0% strand | P38505 |
| D | Calcium-binding protein | protein | 65 | 63% helix, 0% strand | P38505 |
Ligands and binding sites
- CA · Calcium ion · metal · 8 copies · chains A, D, G, J
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.29 | 0.74 | 15 | empty |
| 2 | 64 | 0.29 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- D–G · 391 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 3LI6 · Crystal structure and trimer-monomer transition of N-terminal domain of EhCaBP1 from… · the same entry in another collection · chain J against J, TM-score 1.00
- P38505 · AlphaFold monomer V2.0 prediction for calcium-binding protein (P38505) · a predicted model of the same protein · chain J against A, TM-score 0.45
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38505
- Elsewhere: RCSB PDB 3LI6 · PDBe 3LI6 · UniProt P38505
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