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Crystal structure of single-stranded binding protein (ssb) from bartonella henselae

Analyse Crystal structure of single-stranded binding protein (ssb) from bartonella… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3LGJ
Type: protein
Length: 192 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Single-stranded DNA-binding protein
UniProt: Q6G3Q0
Ligands: CA
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 2 distinct chains · 10% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Single-stranded DNA-binding protein	protein	95	11% helix, 57% strand	Q6G3Q0
B	Single-stranded DNA-binding protein	protein	97	10% helix, 53% strand	Q6G3Q0

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	97	0.35	0.74	20	empty

Interfaces

1 interface between chains.

A–B · 1067 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

3LGJ · Crystal structure of single-stranded binding protein (ssb) from Bartonella henselae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6G3Q0
Elsewhere: RCSB PDB 3LGJ · PDBe 3LGJ · UniProt Q6G3Q0

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