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Crystal structure of susd-like carbohydrate binding protein (YP_001298396.1) from bacteroides vulgatus atcc 8482 at 1.70 a resolution

Analyse Crystal structure of susd-like carbohydrate binding protein (YP_001298396.1)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 3LEW
Type: protein
Length: 476 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Susd-like carbohydrate binding protein
UniProt: A6KZB0
Pockets: 3 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Susd-like carbohydrate binding protein	protein	476	44% helix, 11% strand	A6KZB0

Ligands and binding sites

1PE · Pentaethylene glycol · additive · 12 copies · chains A
2PE · Nonaethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.50	0.86	14	empty
2	117	0.38	0.74	20	1PE
3	57	0.26	0.73	17	empty

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

3LEW · Crystal structure of SusD-like carbohydrate binding protein (YP_001298396.1) from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6KZB0
Elsewhere: RCSB PDB 3LEW · PDBe 3LEW · UniProt A6KZB0

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